The Application of UTY and SRY Molecular Markers for Determination of Unknown Sex Samples in Bali Cattle

  • Indriawati Indriawati Laboratorium Genetika Molekuler Hewan Pusat Penelitian Bioteknologi-LIPI
  • Slamet Diah Volkandari Laboratorium Genetika Molekuler Hewan Pusat Penelitian Bioteknologi-LIPI
  • Endang Tri Margawati Laboratorium Genetika Molekuler Hewan Pusat Penelitian Bioteknologi-LIPI

Abstract

An investigation involving large number of animals is often resulting incomplete or in accurate information such as animal parentage, or misidentify on sex due to unlabeled sex samples. A PCR method by applying Y chromosome markers (UTY and SRY) facilitates in determination of unknown sex problem. This study was intended to determine sex from unlabelled sex of blood samples by applying PCR method using a pooled-DNA template. Twenty five of unknown sex blood samples from Nusa Penida, Bali were used in this study. The samples were plotted into 5 pooled-DNA whith each pool DNA consisted of 5 individuals DNA. Two pairs of sex primers, UTY (58oC) and SRY (60oC) with 35 cycles were applied to amplify the samples. The result showed there was only one pooled-DNA (P4) amplified by UTY (484bp). Whereas re-PCR of the positive pooled-DNA (P4) using SRY primer, only one out of 25 samples determined as male Bali cattle (325bp). This finding suggests that UTY and SRY primers are suitable for sex determination and the pooled-DNA could be used as an efficient PCR method both in consumables and PCR process for sex determination.
Keywords: Determination, sex, unknown sample, pooled DNA, Bali cattle.

References

Appa Rao KBC, V Kesava Rao, BN Kowale & SM. Totey. 1995. Sex Specific Identification of Raw Meat From Cattle, Buffalo, Sheep and Goat. Meat Sciences 39: 123-126.

Bischoff FZ, MK Sinacori & DD Dang. 2002. Cell-Free Fetal DNA and Intact Fetal Cells in Maternal Blood Circulation: Implications for First and Second Trimester Non-Invasive Prenatal Diagnosis. Human Reproduction 8: 493–500.

Chang TC, Yanga Y, EF Retzelc & WS Liu. 2013. Male-Specific Region of The Bovine Y Chromosome is Gene Rich with A High Transcriptomic Activity in Testis Development. Proceedings of National Academy of Science 110: 12373–12378.

da Cruz AS, D Silva, EOA Costa, P De M-Jr , CC da Silva, DM Silva & AD da Cruza. 2012. Cattle Fetal Sex Determination by Polymerase Chain Reaction Using DNA Isolated from Maternal Plasma. Animal Reproduction Science 131: 49– 53

Gill P, C Brenner, B Brinkmann, B Budowle, A Carracedo, MA Jobling, P de Knijff, M Kayser, M Krawczak & WR Mayr. 2001. DNA Commission of The International Society of Forensic Genetics: Recommendations on Forensic Analysis using Y-chromosome STRs. Forensic Sciences International 124: 5–10.

Ginja C, LT da Gama & MC Penedo. 2009. Y chromosome Haplotype Analysis in Portuguese Cattle Breeds using SNPs and STRs. Journal of Heredity. 100: 148–157.

Gokulakrishnan P, RR Kumar, BD Sharma, SK Mendiratta & D Sharma. 2012. Sex Determination of Cattle Meat by Polymerase Chain Reaction Amplification of the DEAD Box Protein (DDX3X/DDX3Y) Gene. Asian-Australasian Journal Animal Sciences 25(5): 733 - 737

Hartatik T, TSM Widi, SD Volkandari, D Maharani & Sumadi. 2014. Analysis of DNA Polymorphism in SRY Gene of Madura Cattle Population. Procedia Enviromental Science 20: 365-369.

Kusdiantoro M, M Olsson, HTA van Tol, S Mikko, BH Vlamings, G Andersson, HR gues-Martinez, B Purwantara, RW Paling , B Colenbrander & JA Lenstra. 2009. On the Origin of Indonesian Cattle. PLoS ONE 4: e5490.

Margawati ET, Indriawati, SD Volkandari & M Ridwan. 2015. Identification of Pure Breed Bali Cattle by Using Molecular Approach. Proceedings of The 6th International Seminar on Tropical Animal Production October 20-22, 426-431

Montgomery GW & JA Sise. 1990. Extraction of DNA from Sheep White Blood Cells. New Zealand Journal Agricultural Research 33: 437-441.

Morikawa T, Y Yamamoto & S Miyaishi. 2011. A new Method for Sex Determination Based on Detection of SRY, STS and Amelogenin Gene Regions with Simultaneous Amplification of Their Homologous Sequences by a Multiplex PCR. Acta Medica Okayama. 65: 113-122.

Rodriguez C, J Bustamante, BM Cruz, & J Negro. 2005. Evaluation of Methods for Gender Determination of Lesser Kestrel Nestlings. Journal of Raptor Research 3:127-133

Silversides DW, N Pilon, R Behjani, A Boyer, I Daneau & J Lussier. 2001. Genetic Manipulation of Sex Differentiation and Phenotype in Domestic animals. Theriogenology 55: 51-63

Svensson, EM. 2010. Detecting Sex and Selection in Ancient Remains using Single Nucleotide Polymorphisms. Acta Universitatis Upsaliensis. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty Science Technology. [Dissertation]

Tozzo P, A Giuliodori, S Corato, E Ponzano, D Rodriguez & L Caenazzo. 2013. Deletion of Amelogenin Y-locus in Forensic: Literature Revision and Description of a Novel Method for Sex Confirmation. Journal of Forensic Legal Medica 20: 387-391.

Tubman LM, Z Brink, TK Suh & GE Seidel Jr. 2004. Characteristics of Calves Produced with Sperm Sexed by Flow Cytometry/Cell Sorting. Journal of Animal Science 82: 1029-1036.

Xia-Hua Z, F Xue-Hui, Wangjin, & Wu-Dengjun. 2014. Sex Identification in Ruminant using SRY and Microsatellite Markers. Asian Journal of Animal Biosciences 8: 98-105.
Published
2020-01-21
How to Cite
INDRIAWATI, Indriawati; VOLKANDARI, Slamet Diah; MARGAWATI, Endang Tri. The Application of UTY and SRY Molecular Markers for Determination of Unknown Sex Samples in Bali Cattle. Jurnal ILMU DASAR, [S.l.], v. 21, n. 1, p. 55-60, jan. 2020. ISSN 2442-5613. Available at: <https://jurnal.unej.ac.id/index.php/JID/article/view/9333>. Date accessed: 09 may 2024. doi: https://doi.org/10.19184/jid.v21i1.9333.
Section
General