ANALYSIS AND IDENTIFICATION OF DNA SEQUENCE VARIATIONS IN Cyprinus carpio IN LAKE KERINCI
Abstract
This study aims to find out the analysis and identification of variations in DNA sequences in Cyprinus carpio in Lake Kerinci. 7. Research using qualitative research type with a literature study method. Data sources come from national and international journals. The results of the study can be concluded that Cyprinus carpio Cyprinus carpio has a varied gene that the number of DNA chromosomes 48 pairs or 2n = 96 who have DNA sequence analysis 5' GCCTTCGTGGCCCTTCCCAC-3' and 5'- GGTTGCTCCTGTCCGCCACCCC-3' and has three microsatellite eloquence, MHF6, MFW7, and MFW9
References
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Xu, P., Li, J., Li, Y., Cui, R., Wang, J., Wang, J., Zhang, Y., & Zhao, Z. (2011). Genomic insight into the common carp ( Cyprinus carpio ) genome by sequencing analysis of BAC-end sequences. BMC Genomics, 12(188), 1–7. https://doi.org/10.1186/1471-2164-12-188
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Yang, C., & Su, J. (2010). Molecular identification and expression analysis of Toll-like receptor 3 in common carp Cyprinus carpio. Journal Fish Biologi, 76(34\), 1926–1939. https://doi.org/10.1111/j.1095-8649.2010.02624.x
Ye, X., Lv, Y., Wei, L., Huang, J., & Wen, Y. (2018). The complete mitochondrial genome of Jinbian carp Cyprinus carpio ( Cypriniformes : Cyprinidae ) The complete mitochondrial genome of Jinbian carp Cyprinus carpio. Mitochondrial DNA Part B, 3(2), 1096–1097. https://doi.org/10.1080/23802359.2018.1495126
Zhang, Y., Wang, S., Li, J., Zhang, X., Jiang, L., Xu, P., Lu, C., Wan, Y., & Sun, X. (2013). Primary genome scan for complex body shape-related traits in the common carp Cyprinus carpio. Journal Fish Biologi, 82(3), 125–140. https://doi.org/10.1111/j.1095-8649.2012.03469.x
Zhao, Y., Zheng, X., Zhu, X., Kuang, Y., & Sun, X. (2020). Genetic variation of common carp Cyprinus carpio L . in China based on mitochondrial COII gene. Aquaculture Reports, 18, 100462. https://doi.org/10.1016/j.aqrep.2020.100462
Zhou, J. F., Wu, Q. J., Ye, Y. Z., & Tong, J. G. (2003). Genetic divergence between Cyprinus carpio carpio and Cyprinus carpio haematopterus as assessed by mitochondrial DNA analysis , with emphasis on origin of European domestic carp. In Genetica 119: (pp. 93–97).
Eichmiller, J. J., Bajer, P. G., & Sorensen, P. W. (2014). The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake. PLOS ONE, 9(11), 1–8. https://doi.org/10.1371/journal.pone.0112611
Gen, P., Pada, G. H., & Donggala, D. (2019). Available online at http://jurnal.untad.ac.id/jurnal/index.php /AGRISAINS. Amirudin Dg. Malewa 1, Lukman Hakim2, Dan Sucik Maylinda2 1Peternakan, 1(20), 46–56.
Han, Z., & Sun, J. (2018). Biases from different DNA extraction methods in intestine microbiome research based on 16S rDNA sequencing : a case in the koi carp , Cyprinus carpio var . Koi. Microbiology, 34(2), 1–9. https://doi.org/10.1002/mbo3.626
Himawan, Y., Syahputra, K., & Ariyanto, D. (2017). PERFORMA PEMBESARAN IKAN MAS RAJADANU ( Cyprinus carpio ) GENERASI KETIGA HASIL SELEKSI “ WALKBACK .” Jurnal Riset Akuakultur, 12(2), 121–129.
Kohlmann, K., Gross, R., Murakaeva, A., & Kersten, P. (2003). Genetic variability and structure of common carp ( Cyprinus carpio ) populations throughout the distribution range inferred from allozyme , microsatellite and mitochondrial DNA markers. Aquatic Living Resources, 16(5), 421–431. https://doi.org/10.1016/S0990-7440(03)00082-2
Lin, M., Zou, J., Wang, C., Cyprinus, L., Lin, M., Zou, J., & Wang, C. (2015). Complete mitochondrial genomes of domesticated and wild common carp ( Cyprinus carpio L .) Complete mitochondrial genomes of domesticated and wild common. Mitochondria DNA, 1736(November), 20–22. https://doi.org/10.3109/19401736.2013.869690
Ma, D., Fan, J., Zhu, H., & Huang, Z. (2019). The complete mitochondrial genome of Cyprinus Carpio Var . Guilin rice flower carp and its phylogeny in Cyprinidae. Mitochondrial DNA Part B, 4(1), 1253–1254. https://doi.org/10.1080/23802359.2019.1591177
Mulkiyah, A., Armin, F., & Rivai, H. (2020). CANDESARTAN ANALYSIS METHODS DURING 2000-2020. WORLD JOURNAL OF PHARMACY AND PHARMACEUTICAL SCIENCES, 9(6), 1854–1884. https://doi.org/10.20959/wjpps20206-16426
Mulyani, Y., & Purwanto, A. (2011). PERBANDINGAN BEBERAPA METODE ISOLASI DNA UNTUK DETEKSI DINI KOI HERPES VIRUS ( KHV ) PADA IKAN MAS ( Cyprinus carpio L .). Jurnal Akuatika, 5(2), 1–16.
Nedoluzhko, A. V, Slobodova, N. V, Sharko, F., Shalgimbayeva, G. M., Tsygankova, S. V, Boulygina, E. S., Nguyen, Z. J. V. Q., Pham, T. T., Nguyen, Đ. T., Volkov, A. A., Fernandes, J. M. O., & Rastorguev, S. M. (2020). ORIGINAL RESEARCH A new strain group of common carp : The genetic differences and admixture events between Cyprinus carpio breeds. Ecology and Evolution, 10(12), 1–9. https://doi.org/10.1002/ece3.6286
Nuryati, S. (2013). Frekuensi dan persistensi vaksin DNA penyandi GP25 yang diberikan melalui pakan pada ikan mas Frequency and persistency of DNA vaccine encoding GP25 by oral on common carp. Jurnal Akuakultur Indonesia, 12(2), 150–157.
Syahputra, K., Himawan, Y., Ariyanto, D., Palimirmo, S., Penelitian, B., & Ikan, P. (2016). PEWARISAN MARKA Cyca-DAB1 * 05 DAN KERAGAMAN GENETIK IKAN MAS ( Cyprinus carpio ) STRAIN RAJADANU TAHAN INFEKSI KOI HERPESVIRUS DAN TUMBUH CEPAT. Ker, 11(2), 115–123.
Syahputra, K., Palimirmo, F. S., Himawan, Y., Penelitian, B., & Ikan, P. (2016). TRANSMISI GEN krt-GP11 DAN PERFORMA KETAHANAN IKAN MAS ( Cyprinus carpio ) TRANSGENIK F-2 TERHADAP INFEKSI KHV. Jurnal Riset Akuakultur, 11, 11(4), 297–305.
Vandeputte, M. (2003). Selective breeding of quantitative traits in the common carp ( Cyprinus carpio ): a review. Aquatic Living Resources, 16(4), 399–407. https://doi.org/10.1016/S0990-7440(03)00056-1
Xu, P., Li, J., Li, Y., Cui, R., Wang, J., Wang, J., Zhang, Y., & Zhao, Z. (2011). Genomic insight into the common carp ( Cyprinus carpio ) genome by sequencing analysis of BAC-end sequences. BMC Genomics, 12(188), 1–7. https://doi.org/10.1186/1471-2164-12-188
Xu, P., Zhang, X., Wang, X., Li, J., Liu, G., Kuang, Y., Xu, J., Zheng, X., Ren, L., Wang, G., Zhang, Y., Huo, L., Zhao, Z., Cao, D., Lu, C., Li, C., Zhou, Y., Liu, Z., Fan, Z., … Sun, X. (2014). Genome sequence and genetic diversity of the common carp , Cyprinus carpio. Nature Publishing Group, 46(11), 1212–1219. https://doi.org/10.1038/ng.3098
Yang, C., & Su, J. (2010). Molecular identification and expression analysis of Toll-like receptor 3 in common carp Cyprinus carpio. Journal Fish Biologi, 76(34\), 1926–1939. https://doi.org/10.1111/j.1095-8649.2010.02624.x
Ye, X., Lv, Y., Wei, L., Huang, J., & Wen, Y. (2018). The complete mitochondrial genome of Jinbian carp Cyprinus carpio ( Cypriniformes : Cyprinidae ) The complete mitochondrial genome of Jinbian carp Cyprinus carpio. Mitochondrial DNA Part B, 3(2), 1096–1097. https://doi.org/10.1080/23802359.2018.1495126
Zhang, Y., Wang, S., Li, J., Zhang, X., Jiang, L., Xu, P., Lu, C., Wan, Y., & Sun, X. (2013). Primary genome scan for complex body shape-related traits in the common carp Cyprinus carpio. Journal Fish Biologi, 82(3), 125–140. https://doi.org/10.1111/j.1095-8649.2012.03469.x
Zhao, Y., Zheng, X., Zhu, X., Kuang, Y., & Sun, X. (2020). Genetic variation of common carp Cyprinus carpio L . in China based on mitochondrial COII gene. Aquaculture Reports, 18, 100462. https://doi.org/10.1016/j.aqrep.2020.100462
Zhou, J. F., Wu, Q. J., Ye, Y. Z., & Tong, J. G. (2003). Genetic divergence between Cyprinus carpio carpio and Cyprinus carpio haematopterus as assessed by mitochondrial DNA analysis , with emphasis on origin of European domestic carp. In Genetica 119: (pp. 93–97).
Published
2021-04-29
How to Cite
SANTOSA, Tomi Apra; RAZAK, Abdul; SEPTIYANI, Eria Marina.
ANALYSIS AND IDENTIFICATION OF DNA SEQUENCE VARIATIONS IN Cyprinus carpio IN LAKE KERINCI.
BIOEDUKASI, [S.l.], v. 19, n. 1, p. 20-23, apr. 2021.
ISSN 2580-0094.
Available at: <https://jurnal.unej.ac.id/index.php/BIOED/article/view/21214>. Date accessed: 20 apr. 2024.
doi: https://doi.org/10.19184/bioedu.v19i1.21214.
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https://orcid.org/0000-0003-1920-0515
